Organism Scoping

Identifying Organism Scoping

There a multiple scenarios that allow for organisms to be selected:

  • Add / Edit Cultures
  • Add / Edit Breakpoints
  • Add / Edit Test Patterns
  • Add / Edit Alerts
  • Add Organism to organism group

This article will describe the process of Organism Scoping.  Some of these scenarios use a modified version of the Organism Scoping mechanism however this does not change the underlying system.

OrgScoping.png

Organism Scoping can be identified through the presence of a dropdown for Order, Genus, Organism Group or a Full Organism Search button as shown in the image above.  Not all of these items must be present for the mechanism to be considered an Organism Scoping mechanism. Only 1 (one) of the selection methods should be used at a time.

Order

The Order selection mechanism is a collection of cascading searchable dropdown boxes. Once an Order has been selected, a Family dropdown will appear. 

OrgFullOrder.png

Only matching organisms will appear within the dropdowns, for example: only Species that have the Salmonella Genus will appear in the Species dropdown list.

Genus

The Genus scoping mechanism is a limited version of the Order scoping mechanism. Both work in the same way, however the Genus scoping mechanism starts at the Genus level and the dropdown list contains all Genera in the system.  The subsequent Species dropdown list will be filtered to the Species for the selected Genus.

OrgGEnus.png

Organism Group

The Organism Group scoping mechanism is different from the other scoping mechanisms as by default it allows for multiple organisms to be scoped in once.  All organisms that are within the group will be scoped using this mechanism.

OrgGroupgroup.png

Note: For more information about Organism Groups see: Organisms - SedriLims.

Full Organism Search

The Full Organism Search scoping mechanism allows for keywords to be used to search for the desired organism.  The Full Organism Search is also the only scoping mechanism that allows for searching using synonyms and preferred names of organisms. For information on how to use the Full Organism Search, see: Running a Full Organism Search.

OrgFullSearch.png

Note: For more information about Preferred Organism Names see: Link to Organism Preferred Name article
Note: For more information about Organism Synonyms see: Link to Organism Synonym article

 

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